Alexis Hucteau PhD project
Notes about all the project advances and researches during the PhD
PhD_project
In silico, epigenomic and functional investigations of resistance to IDH inhibitors in acute myeloid leukemia
- 2nd year plan
- Points meetings
- Introduction
- Organisation
- Analysis
- Presentations
- Conferences
- Bibliography
2nd year plan and ideas
Points meeting
Introduction
An introduction of the thesis topic with some bibliography on AML, IDHm, epigenomic and stress in cancer.
Organisation
- Weekly to-do lists
The weekly to-do lists updated every days if needed. - Weekly advances
The weekly advances updated day by day.
Analysis
In silico analysis
- Tutorial rMATS
- Meeting notes
Notes for and about meetings - Cell lines notes
Notes about cell lines like HL60 and MOLM14 specificities - Cell line analysis on HL60 and MOLM14 IDHm +/- IDHi Affymetrix
- Patients samples analysis on Koichi and Verhaak dataset RNAseq & affymetrix
- Methylation analysis on Koichi’s cohort Patient sample + CD34+ samples
- RNA splicing analysis
- Notes on sequencing
- Side projects